Sam I.C., Su Y.F., Chan Y.F., Nor’E S.S., Hassan A., Jafar F.L., Joseph U., Halpin R.A., Ghedin E., Hooi P.S., Fourment M., Hassan H., AbuBakar S., Wentworh D.E., and Smith G.J. Evolution of influenza B virus in Kuala Lumpur, Malaysia between 1995 and 2008. J Virol, 2015.

Fourment M. & Holmes E.C. Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry. BMC Evol Biol, 2015.

Vijaykrishna D., Holmes E.C., Joseph U., Fourment M., Su Y.C.F., Halpin R., Lee R.T.C., Deng Y.M., Gunalan V., Lin X., Stockwell T.B., Fedorova N.B., Zhou B, Spirason N., Kühnert D., Bosková V., Stadler T., Costa A.M., Dwyer D.E., Huang Q.S., Jennings L.C., Rawlinson W., Sullivan S.G., Hurt A.C., Maurer-Stroh S., Wentworth D.E., Smith G.J.D., and Barr I.G. The contrasting phylodynamics of human influenza B viruses. eLife 2005.

Fourment M.  & Holmes E.C. Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data. BMC Evol Biol. 2014.

Wagner D.M., Klunk J., Harbeck M., Devault A., Waglechner N., Sahl J.W., Enk J., Birdsell D.N., Kuch M., Lumibao C., Poinar D., Pearson T., Fourment M., Golding B., Riehm J.M., Earn D.J., Dewitte S., Rouillard J.M., Grupe G., Wiechmann I., Bliska J.B., Keim P.S., Scholz H.C., Holmes E.C., Poinar H. Yersinia pestis and the Plague of Justinian 541-543 AD: a genomic analysis. Lancet Infect Dis. 2014.

Bahl J., Krauss S., Kühnert D., Fourment M., Raven G., Pryor P., Niles L.J., Danner A., Walker D., Mendenhall I., Su Y.C., Dugan V.G., Halpin R.A., Stockwell T.B., Webby R.J., Wentworth D.E., Drummond A.J., Smith G.J.D., and Webster R.G. Spatial diffusion of avian influenza A virus between North American migratory bird populations maintains genetic diversity and persistence. PLoS Pathog. 2013.

Shanmuganatham K., Feeroz M.M., Jones-Engel L., Smith G.J., Fourment M., Walker D., McCle- naghan L., Alam S.M., Hasan M.K., Seiler P., Franks J., Danner A., Barman S., McKenzie P., Krauss S., Webby R.J., Webster R.G. Antigenic and molecular characterization of avian influenza A(H9N2) viruses, Bangladesh. Emerg Infect Dis. 2013.

Vijaykrishna D., Deng Y.M., Su Y.C. Fourment M., Iannello P., Arzey G.G, Hansbro P.M., Arzey K.E., Kirkland P.D., Warner S., O’Riley K., Barr I.G. Smith G.J., and Hurt A.C. The recent establishment of North American H10 lineage influenza viruses in Australian wild waterfowl and the evolution of Australian avian influenza viruses. J Virol. 2013.

Westgeest K.B., de Graaf M., Fourment M., Bestebroer T.M., van Beek R., Spronken M.I., de Jong J.C., Rimmelzwaan G.F., Russell C.A., Osterhaus A.D., Smith G.J., Smith D.J., Fouchier R.A. Genetic Evolution of Neuraminidase of Influenza A (H3N2) Viruses from 1968 to 2009 and its Correspondence to Hemagglutinin. J Gen Virol. 2012.

Wertheim J.O., Fourment M., Kosakovsky Pond S.L. Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy. Mol Biol Evol., 2012.

Kosakovsky Pond S.L., Murrell B., Fourment M., Frost S.D., Delport W., and Scheffler K.. A random effects branch-site model for detecting episodic diversifying selection. Mol Biol Evol. 2011 Jun 1.

Duval L., Fourment M., Nerrienet E., Rousset D., Sadeuh Mba S., Goodman S., Andriaholinirina N., Randrianarivelojosia M, Paul R., Robert V., Ayala F., and Ariey F. African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus. Proc Natl Acad Sci USA, 2010, 107, 10561-6.

Fourment M., Wood J.T., Gibbs A.J., and Gibbs M.J. Evolutionary dynamics of the N1 neuraminidases of the main lineages of influenza A viruses. Mol Phylogenet Evol., 2010, 56, 526-535.

Fourment M.; Mardy S., Channa M. and Buchy P. Evidence for persistence of and antiviral resistance and reassortment events in seasonal influenza virus strains circulating in Cambodia. J Clin Microbiol., 2010, 48, 295-7.

Buchy P., Fourment M., Mardy S., Sorn S., Holl D., Ly S. Vong S.,  Enouf V., Peiris J.S.M. and 
van der Werf S.  Molecular epidemiology of clade 1 influenza A viruses (H5N1), Southern 
Indochina Peninsula, 2004-2007. Emerging Infectious Diseases, 2009, 15, 1641-1644.

Duval L., Nerrienet E., Rousset D., Sadeuh, S., Houze S., Fourment M., Robert V. and Ariey F. 
Chimpanzee malaria parasites exhibit phylogenetic relationships with Plasmodium ovale in Africa. 
PLoS ONE, 2009, 4, e5520.

Fourment M.; Gibbs A.J. and Gibbs M.J. SWeBLAST: A Sliding Window Web­based BLAST tool 
for recombinant analysis. J Virol Methods, 2008, 152, 98­101.

Fourment M. & Gibbs M.J. The VirusBanker database uses a Java program to allow flexible 
searching through Bunyaviridae sequences. BMC Bioinformatics, 2008, 9, 83.

Fourment M. & Gillings M.R. A comparison of common programming languages used in 
bioinformatics. BMC Bioinformatics, 2008, 9, 82.

Zheng L., Wayper P.J., Gibbs A.J., Fourment M., Rodoni B.C. and Gibbs, M.J. Accumulating 
variation at conserved sites in potyvirus genomes is driven by species discovery and affects degenerate 
primer design. PLoS ONE, 2008, 3, e1586.

Gibbs M.J., Wayper, P., Fourment M., Wood J.T., Ohshima K., Armstrong J.S. and Gibbs A.J. The 
variable codons of H3 influenza A virus haemagglutinin genes. Arch Virol. 2007 Jan; 152:11­24.

Fourment M. & Gibbs M.J. PATRISTIC: a program for calculating patristic distances and 
graphically comparing the components of genetic change. BMC Evol Biol 2006, 6:1.